Introduction
Bioinformatics
1. bioconda
2. bioconductor
Coding tools
Command line
Data analyses
1. differential expression analysis
2. single cell analysis
Data downloads / reanalysis
1. SRA, ENA, NCBI, Ensembl
2. TCGA, TARGET, GTEx
Data formats and tools
Data presentation
Programming Languages
1. python
2. R
3. Rust
Reference data
1. liftover between references
Statistics
1. bayesian statistics (priors, likelihoods and posterior distributions)
2. frequentist statistics (hypothesis tests, p-values, etc.)
Workflow management
1. Nextflow
2. Snakemake
Working on servers

A collection of resources for data scientists (not only) in bioinformatics

Bioinformatics

For a tool to convert between lots of bioinformatics file formats, see the bioconvert description in the data formats section.